Category:Bioinformatics

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Revision as of 08:39, 13 August 2013 by Raj (talk | contribs) (→Shell)
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Info

  1. IP


Bio ITC Projects

  1. SSR_Corymbia
  2. Ortho-SSR-Euca
  3. Transcriptomics-Tobacco
  4. GenePrediction-Euca
  5. Tilling_Genes
  6. SBase Genes | Water use efficiency
  7. Casuarina Genome initiative

Bio Other Projects

  1. Ppea-EST
  2. Sangar_split | Raja, Canada
  3. Soghum Physical mapping | EST-GDNA | Rajendrakumar | DRR, Hyderabad
  4. Heterosis Genes Synteny | Rice-wheat-maize on Sorghum | RK | DRR, Hyderabad
  5. BES-NR_Blast_Flax | Flax BES blast against Non Redundant database
  6. Parse_EST-BES_Flax | Parse the required parameters from Blast Output
  7. parse_sorghum_genome.pl parse the sorghum genome data to have comfortable files | RK
  8. SSR on BES | Uses Misa and Primer3
  9. Repeat_Blast | Parse Blast on various repeats
  10. TGICL assembly | Caster unigenes | For Rajendra kumar

My Perl

  1. PerlTemplate
  2. split_file
  3. Fix_digits
  4. count_fasta_characters
  5. Multithreading
  6. Transpose
  7. uniq
  8. Push_to_Array

BioPerl

  1. BioPerl
  2. Fetching_Fasta
  3. Some_Perl_examples

MySql

  1. Mysql_commands
  2. Phpmyadmin
  3. perl-mysql

Shell

  1. Shell
  2. Compression
  3. bashrc

Software Implementation

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