Soghum Physical mapping

Category:Bioinformatics

• Obj
  • EST Vs Sorghum Full genome (chromosome wise)
• Script
  • blast_est-gdna_sorghum.pl
  • parse_blast_est-gdna_sorghum.pl
• Result
  • http://www.bio.rajkumar.in/user/rk/est-gdna-map/

Dear Raj,
 
I want to BLAST two sets of sequences for different purposes.
 
Data set I: A set of around 3000-3500 sorghum unique ESTs
For this, I want to know their physical position in the sorghum genome so that I can identify those near to already reported QTLs.
 
Data set I: A set of EST/gene sequences related to heterosis from maize wheat and rice in three different text files
The idea is to find their transferability in sorghum based on their homology
 
I have attached the data files (single text file is for data set I and zipped file is the second data set).
 
Hope I have clearly mentioned the purpose of analysis of both the data sets. Please mail me if you have any doubts.
 
regards,
 
Rajendra Kumar