Category:Bioinformatics: Difference between revisions
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=== Docker === | |||
# [[Basic Pull]] | |||
===Info === | |||
# [[IP]] | |||
===Bio ITC Projects=== | ===Bio ITC Projects=== | ||
# [[SSR_Corymbia]] | |||
# [[Ortho-SSR-Euca]] | # [[Ortho-SSR-Euca]] | ||
# [[Transcriptomics-Tobacco]] | # [[Transcriptomics-Tobacco]] | ||
| Line 6: | Line 15: | ||
# [[SBase Genes]] | Water use efficiency | # [[SBase Genes]] | Water use efficiency | ||
# [[Casuarina Genome initiative]] | # [[Casuarina Genome initiative]] | ||
===Bio Other Projects=== | ===Bio Other Projects=== | ||
# [[Ppea-EST]] | # [[Ppea-EST]] | ||
| Line 15: | Line 25: | ||
# [[parse_sorghum_genome.pl]] parse the sorghum genome data to have comfortable files | RK | # [[parse_sorghum_genome.pl]] parse the sorghum genome data to have comfortable files | RK | ||
# [[SSR on BES]] | Uses Misa and Primer3 | # [[SSR on BES]] | Uses Misa and Primer3 | ||
# [[Repeat_Blast]] | Parse Blast on various repeats | |||
# [[TGICL assembly]] | Caster unigenes | For Rajendra kumar | |||
=== My Perl=== | === My Perl=== | ||
| Line 23: | Line 35: | ||
# [[Multithreading]] | # [[Multithreading]] | ||
# [[Transpose]] | # [[Transpose]] | ||
# [[uniq]] | |||
# [[Push_to_Array]] | |||
===BioPerl=== | ===BioPerl=== | ||
| Line 35: | Line 49: | ||
===Shell=== | ===Shell=== | ||
# [[Crontab]] | |||
# [[Shell]] | # [[Shell]] | ||
# [[Compression]] | |||
# [[bashrc]] | |||
===Software Implementation=== | ===Software Implementation=== | ||
* Genome | * Genome | ||
Latest revision as of 16:57, 22 October 2024
Docker
Info
Bio ITC Projects
- SSR_Corymbia
- Ortho-SSR-Euca
- Transcriptomics-Tobacco
- GenePrediction-Euca
- Tilling_Genes
- SBase Genes | Water use efficiency
- Casuarina Genome initiative
Bio Other Projects
- Ppea-EST
- Sangar_split | Raja, Canada
- Soghum Physical mapping | EST-GDNA | Rajendrakumar | DRR, Hyderabad
- Heterosis Genes Synteny | Rice-wheat-maize on Sorghum | RK | DRR, Hyderabad
- BES-NR_Blast_Flax | Flax BES blast against Non Redundant database
- Parse_EST-BES_Flax | Parse the required parameters from Blast Output
- parse_sorghum_genome.pl parse the sorghum genome data to have comfortable files | RK
- SSR on BES | Uses Misa and Primer3
- Repeat_Blast | Parse Blast on various repeats
- TGICL assembly | Caster unigenes | For Rajendra kumar
My Perl
- PerlTemplate
- split_file
- Fix_digits
- count_fasta_characters
- Multithreading
- Transpose
- uniq
- Push_to_Array
BioPerl
MySql
Shell
Software Implementation
Pages in category "Bioinformatics"
The following 62 pages are in this category, out of 62 total.