Soghum Physical mapping: Difference between revisions
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Created page with '* Obj ** EST Vs Sorghum Full genome (chromosome wise) * Script ** blast_est-gdna_sorghum.pl ** parse_blast_est-gdna_sorghum.pl * Result ** http://www.bio.rajkumar.in/user…' |
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** EST Vs Sorghum Full genome (chromosome wise) | ** EST Vs Sorghum Full genome (chromosome wise) | ||
Latest revision as of 04:36, 8 July 2014
- Obj
- EST Vs Sorghum Full genome (chromosome wise)
- Script
- Result
Dear Raj, I want to BLAST two sets of sequences for different purposes. Data set I: A set of around 3000-3500 sorghum unique ESTs For this, I want to know their physical position in the sorghum genome so that I can identify those near to already reported QTLs. Data set I: A set of EST/gene sequences related to heterosis from maize wheat and rice in three different text files The idea is to find their transferability in sorghum based on their homology I have attached the data files (single text file is for data set I and zipped file is the second data set). Hope I have clearly mentioned the purpose of analysis of both the data sets. Please mail me if you have any doubts. regards, Rajendra Kumar