SBase Genes

SBase Genes are identified (orthologous) genes to be used to develop markers for water use efficiency

Conformation of Selected Genes in tobacco

• Blast against methylated (TGI) sequences
  • 2 selected genes

     SBPASE
     CHL

• • Blastn against TGI [contig]
  • Results

SBPASE	CL321Contig1	82.33	651	115	0	544	1194	1076	426	4e-104	 379
SBPASE	CL321Contig3	82.24	653	116	0	549	1201	1168	516	6e-103	 375
SBPASE	CL321Contig5	82.51	526	92	0	544	1069	387	912	2e-84	 313
SBPASE	CL321Contig4	83.30	443	74	0	759	1201	12	454	7e-78	 291
SBPASE	CL321Contig2	89.06	64	7	0	1131	1194	639	576	1e-11	71.9

CHL	CL1Contig4271	99.89	880	1	0	31	910	954	75	0.0	1695
CHL	CL1Contig35	94.27	803	46	0	61	863	905	103	0.0	1227
CHL	CL1Contig4474	86.77	801	106	0	61	861	86	886	0.0	 747
CHL	CL1Contig4451	86.77	801	106	0	61	861	900	100	0.0	 747
CHL	CL1Contig204	99.20	250	2	0	660	909	1178	929	8e-135	 480
CHL	CL1Contig4000	79.73	518	105	0	267	784	771	254	7e-49	 194
CHL	CL1Contig4103	79.05	592	124	0	267	858	284	875	1e-47	 190
CHL	CL1Contig4078	79.05	592	124	0	267	858	687	96	1e-47	 190
CHL	CL1Contig128	88.04	184	22	0	594	777	220	403	1e-47	 190
CHL	CL1Contig3921	79.54	518	106	0	267	784	998	481	2e-46	 186
CHL	CL1Contig740	78.95	589	124	0	270	858	682	94	7e-46	 184
CHL	CL1Contig443	79.19	591	121	2	270	858	697	107	1e-44	 180
CHL	CL1Contig741	79.22	515	107	0	270	784	680	166	3e-42	 172
CHL	CL1Contig4108	78.38	592	128	0	267	858	278	869	4e-38	 159
CHL	CL1Contig738	78.97	485	102	0	270	754	772	288	2e-36	 153
CHL	CL1Contig4288	78.64	515	110	0	270	784	285	799	4e-35	 149
CHL	CL1Contig2865	78.64	515	110	0	270	784	287	801	4e-35	 149
CHL	CL1Contig3910	78.04	592	130	0	267	858	686	95	2e-33	 143