SNP: Difference between revisions

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* Minimum Read depth
* Minimum Read depth
* Based on Phred scores
* Based on Phred scores
** 1% error rate
* 1% error rate
* Alignment (Trade off between accuracy and read depth)
*
*

Revision as of 08:18, 17 May 2016

SNP Filtering Plans

Base Calling

  • Minimum Read depth
  • Based on Phred scores
  • 1% error rate
  • Alignment (Trade off between accuracy and read depth)