Transcriptomics-Tobacco: Difference between revisions
Jump to navigation
Jump to search
| Line 7: | Line 7: | ||
** Print Array : JAN 2010 | ** Print Array : JAN 2010 | ||
** Combining the protein data: MAR 2010 | ** Combining the protein data: MAR 2010 | ||
** Re annotation of hybridised '''genes''' : | ** Re annotation of hybridised '''genes''' : APR 2010 | ||
** Consenses of the 2 data for the selected genes ( | ** Consenses of the 2 data for the selected genes (MAY 2010) | ||
** Validate selected genes (100) by RT: JUN 2010 | ** Validate selected genes (100) by RT: JUN 2010 | ||
** '''Manuscript''' (after approval): JUL 2010 | |||
** Lab validation of selected genes: DEC 2010 | ** Lab validation of selected genes: DEC 2010 | ||
** Get the final list of genes characterised : JAN 2011 | ** Get the final list of genes characterised : JAN 2011 | ||
** Manuscript MAR 2011 | ** '''Manuscript''' MAR 2011 | ||
=Scientific Assumptions= | =Scientific Assumptions= | ||
Revision as of 06:49, 4 January 2010
Tobacco Pipeline Target
- Get the differentially expressed Genes in tobacco leaf
- Author: Guru and Rajkumar and et al
- Timeline
- Sequencing of ESTs: SEP 2009
- Assemble / pre annotation: NOV 2009
- Print Array : JAN 2010
- Combining the protein data: MAR 2010
- Re annotation of hybridised genes : APR 2010
- Consenses of the 2 data for the selected genes (MAY 2010)
- Validate selected genes (100) by RT: JUN 2010
- Manuscript (after approval): JUL 2010
- Lab validation of selected genes: DEC 2010
- Get the final list of genes characterised : JAN 2011
- Manuscript MAR 2011
Scientific Assumptions
Strategy
Implementation
- Some Tools
- gth_run
- trim_seq | Filter "N", size
- multifasta-fastas