StrongWeekPlan

AUG2011

15-19 AUG

15-19 AUG 2011

1. Ashok
   1. Continuation of DNA isolation from remaining 32 samples.
   2. Discussion on digital gene expression studies.
   3. Quality and quantity check for isolated casuariana DNA
2. Raj
   1. Annual report printed for corporate R&D.
   2. BGI Technical comments communicated
   3. Keygene - follow-up
   4. Monograph - Layout (pending from last week)
   5. Follow-up of IT Team for POC (CITC sent; Model built)
   6. Follow up of recruitment
3. Prasad:
   1. Restart SSR analysis with modified analysis plan.
   2. Isolate DNA from fertilizer treated leaves, xylem tissues
   3. Freeze deliverables
   4. Facilitate PO for CodonCode Aligner and PremierPrimer
   5. Communicate the RNA preservative to Corp R&D.
4. Bhushan:
   1. DNA isolation from grandis and globulus sps/quality check
   2. Complete the Diversity analysis

8-12 AUG

1. Nagabhushana
   1. Continuing the analysis of SSR data of GD and presentation of report with take home messages
   2. BLUP presentation on Friday and to discuss on DArT feasibility in the group
   3. Discussion with Mohan sir on 2011-12 deliverables and submission of the same.
2. Ashok:
   1. Continuation of DNA isolation from different species of Casuariana (to be completed 100% of samples)
   2. Literature search for digital gene expression
3. Prasad:
   1. Preparations for isolation of DNA from fertilizer treated tissues beginning if possible
   2. Over-see the SSR analysis once again (there were few bugs in the analysis done last week)
   3. Possibility to isolate RNA from roots and secondary xylem.
   4. Communication with Malathi about IPR possibility for the tissue preservative
   5. Freez the deliverables with timeline
4. Raj:
   1. Overviewing the strand genomics facility and feasibility.
   2. Annual report printed for corporate R&D.
   3. Relevant communication from Keygene/BGI.
   4. Monograph layout shown to Mohan.
   5. Finding appropriate hardware and getting quotes for the new architecture proposed by IT team.

1-5 AUG

1. Raj
   1. Revise the CITPC notes for Processing server and NAS Storage
   2. Complete the corrections of Casuarina patent written by Ashok (pending from Last 2 weeks)
   3. Call for Pushkar for a detailed interview (Raj - Pushker - first round)
   4. Monograph layout shown to Mohan
   5. Annual report printed for corporate R&D
   6. Deliverables Presentation (Wednesday) for the team to Navin and Mohan (pending from Last week)
   7. Keygene SA compiled and sent to Ashok.D
   8. Call BGI for negotiation process initiation
2. Prasad
   1. To test possibility to isolate RNA from fertilizer treatment experiment.
   2. Placing purchase orders for codan code alignment and Gene tool.
   3. Casuarina SSR Primer designing completed.
   4. Some literature search for gene identifications in hormonal pathways.
   5. Designing the experimental layout for Bindu's Silica experiment.
   6. Deliverables plan to be frozen and signed by Navin (pending from Last week)
3. Nagabhushana
   1. Complete the diversity analysis of TD-GD (pending from Last week)
   2. Explore BLUP algorithms and present on Friday (pending from Last week)
   3. Explore DArT, Australia for genotyping quote (Explore the technology of DART and present to group - Pending from last week)
   4. Deliverables plan to be frozen and signed by Navin (pending from Last week)
4. Ashok
   1. Complete DNA isolation on Casuarina species samples
   2. Initiating species specific marker analysis
   3. Presentation on the digital gene expression project

JUL2011

25-29 JUL

1. Raj
   1. POC Meeting with IT, Kolkotta on GS Data flow plan
   2. CITPC notes for NAS Storage
   3. Keygene DOC(SA) finalized and to be submitted on Monday
   4. BGI DOC(SA) to be submitted on Monday
   5. Complete the corrections of Casuarina patent written by Ashok (pending from Last week)
   6. Initial Write-up shown to Mohan on Monograph (1 chapter)
   7. Call for Bioinformatics PDF interview
   8. Deliverables Presentation (Wednesday) to Navin and Mohan
   9. Deliverables plan to be frozen and signed by Navin
2. Prasad
   1. Casuarina SSRs - complete finding SSR motifs in all the 4 species.
   2. Process the purchase of GeneTool and One more sequence analysis software for purchasing
   3. Deliverables plan to be frozen and signed by Navin
3. Nagabhushana
   1. Complete the diversity analysis of TD-GD (pending from last week)
   2. Explore BLUP algorithms and present on Friday (pending from last week)
   3. Explore DART, Australia for genotyping quote (Explore the technology of DART and present to group - Pending from last week)
   4. Deliverables plan to be frozen and signed by Navin
4. Ashok
   1. Complete DNA isolation on Casuarina species samples (Pending from last week)
   2. Drought studies - continue imposing treatments (Kovai)
   3. Deliverables plan to be frozen and signed by Navin

11-15 JUL

1. Raj
   1. Complete the corrections of Casuarina patent written by Ashok
   2. Write the justification note for Neerajaskshi and submit to Navin and HR
   3. Data flow plan validation and write-up
   4. CITPC notes for GS hardware
   5. Finalized plan for Tobacco sample verification, communicated to Keygene
   6. Initiating PSPD presentation
2. Prasad
   1. Tour reports (Australia and Brazil)
   2. Casuarina SSRs - primer designing
3. Nagabhushana
   1. Complete the diversity analysis of TD-GD
   2. Get E. globulous and E. grandis samples from Nilgiris (organise through Riaz- CBE) - This is for marker validation
   3. Explore BLUP algorithms and present on Friday
   4. Explore DIRT, Australia for genotyping quote
4. Ashok
   1. Collect information on Casuarina materials and present to group on Friday
   2. Complete DNA isolation on species samples
   3. Discuss plan for genome wide selection
   4. Make a tour plan for Kovai ( Drought studies and transcriptomics)