Transcriptomics-Tobacco: Difference between revisions
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## [[trim_seq]] | Filter "N", size | ## [[trim_seq]] | Filter "N", size | ||
## [[multifasta-fastas]] | ## [[multifasta-fastas]] | ||
## [[mapping ESTs on tgi]] | ## [[mapping ESTs on tgi]] | ||
Revision as of 06:51, 4 January 2010
Tobacco Pipeline Target
- Get the differentially expressed Genes in tobacco leaf
- Author: Guru and Rajkumar and et al
- Timeline
- Sequencing of ESTs: SEP 2009
- Assemble / pre annotation: NOV 2009
- Print Array : JAN 2010
- Combining the protein data: MAR 2010
- Re annotation of hybridised genes : APR 2010
- Consenses of the 2 data for the selected genes (MAY 2010)
- Validate selected genes (100) by RT: JUN 2010
- Manuscript (after approval): JUL 2010
- Lab validation of selected genes: DEC 2010
- Get the final list of genes characterised : JAN 2011
- Manuscript MAR 2011
Scientific Assumptions
Strategy
Implementation
- Some Tools
- gth_run
- trim_seq | Filter "N", size
- multifasta-fastas
- mapping ESTs on tgi