Transcriptomics-Tobacco: Difference between revisions

From RAJ INFO
Jump to navigation Jump to search
mNo edit summary
Line 13: Line 13:
=Strategy=
=Strategy=
=Implementation=
=Implementation=
# Genome threading
# Some Tools
## [[gth_run]]
## [[gth_run]]
## [[trim_seq]] | Filter "N", size
## [[trim_seq]] | Filter "N", size

Revision as of 19:32, 3 January 2010

Tobacco Pipeline Target

  • Get the differentially expressed Genes in tobacco leaf
  • Author: Guru and Rajkumar and et al
  • Timeline
    • Sequencing of ESTs: SEP 2009
    • Assemble / pre annotation: NOV 2009
    • Print Array  : JAN 2010
    • Re annotation  : MAR 2010
    • Lab validation of selected genes: DEC 2010
    • Get the final list of genes characterised : JAN 2011
    • Manuscript MAR 2011

Scientific Assumptions

Strategy

Implementation

  1. Some Tools
    1. gth_run
    2. trim_seq | Filter "N", size
    3. multifasta-fastas