Transcriptomics-Tobacco: Difference between revisions
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=Tobacco Pipeline Target= | |||
* Get the differentially expressed Genes in tobacco leaf | |||
* Author: Guru and Rajkumar and et al | |||
* Timeline | |||
** Sequencing of ESTs: SEP 2009 | |||
** Assemble / pre annotation: NOV 2009 | |||
** Print Array : JAN 2010 | |||
** Re annotation : MAR 2010 | |||
** Lab validation of selected genes: DEC 2010 | |||
** Get the final list of genes characterised : JAN 2011 | |||
** Manuscript MAR 2011 | |||
=Scientific Assumptions= | |||
=Strategy= | |||
=Implementation= | |||
# Genome threading | # Genome threading | ||
## [[gth_run]] | ## [[gth_run]] | ||
Revision as of 19:32, 3 January 2010
Tobacco Pipeline Target
- Get the differentially expressed Genes in tobacco leaf
- Author: Guru and Rajkumar and et al
- Timeline
- Sequencing of ESTs: SEP 2009
- Assemble / pre annotation: NOV 2009
- Print Array : JAN 2010
- Re annotation : MAR 2010
- Lab validation of selected genes: DEC 2010
- Get the final list of genes characterised : JAN 2011
- Manuscript MAR 2011
Scientific Assumptions
Strategy
Implementation
- Genome threading
- gth_run
- trim_seq | Filter "N", size
- multifasta-fastas