Category:Biology - Revision history

Raj: Raj moved page Category:TDGD to Category:Biology without leaving a redirect

2016-11-21T04:26:03Z

Raj moved page Category:TDGD to Category:Biology without leaving a redirect

← Older revision	Revision as of 04:26, 21 November 2016
(No difference)

Raj: /* TD-GD in Euca */

2010-01-18T11:28:33Z

TD-GD in Euca

← Older revision		Revision as of 11:28, 18 January 2010
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	*** Normalise to find out the pattern		*** Normalise to find out the pattern
	*** Interpret for each type of data		*** Interpret for each type of data
			<pre>
			===============
			GD-TD in Euca
			===============

			What it is?
			It is a graph that plots genetic diversity and trait diversity in consensus units, which depicts the status, essentially helps in decision making on crop improvement programe such as
			* To ascertain the worthiness of the strategies amalgamated to improve the trait diversity
			* To provide the scope for necessitating the improvement for genetic diversity

			Objective:
			To establish the GD-TD status of Indian eucalyptus core population


			Strategy
			* Representative materials (10) from each pool for diversity estimates (analysis together)
			* Existing realistic data (Mor. Traits)
			* Expected heterozygosity (He) vs each mor. traits
			* Estimate the He-Ho to acertain the quantum if Hardy wainberg forces on each population
			* plot the data
			* Interpret to provide breeding strategy for each population
			* Publication (Timeline DEC 2010)


			Real scale Materials
			SNP Material (2 provinace from Australia)
			IFGTP (Collection)
			ITC clones
			Hybrids of Ec vs Ep
			New Species pool
			E. urophylla collection (South Africa)
			New clones selection

			====================================================================
			Pilot experiment
			Plot GD-TD of New clones selection for 'PY' vs 'He' for 10 selected new clones

			Strategy
			* 10 New clones + 5 ITC clones were selected for analysis
			* 'He' 'Ho' were estimated using 15 selected SSR markers
			* 'PY' was estimated using NIR
			* Analysis
			* Heterozygosity was estimated for individual groups (ITC and New clones) as well as combined ITC+New clones
			* For the indidual He values of new clones, each new clone data was combined with all ITC clones
			* Values were ploted as below
			* 'He' of indidual New cloens vs pulp yield
			* Mean 'He' vs mean pulp yiled of new clones
			* Mean 'He' vs mean pulp yiled of ITC clones
			* Mean 'He' vs mean pulp yiled of ITC+new clones

			* Results and 'take home' from pilot experiment with new clone
			* "He" is ~0.69 for ITC and NC, when analyzed individually. Though ITC clones and new clones "little" differ mathematically, they do not differ significantly, both group have good allelic diversity, that tells us the potential for improvement.

			* When data is analyzed as a whole (ITC+NC), the "He" deviates (0.72) then either of the individual group. This essentially means that there are different set of alleles (so its frequency) present in each group. Therefore NC and ITC types deserve the definition of "population" that arise from different pedigree.

			* In all the cases, Ho is ~0.4 and the deviation of He and Ho ("He-Ho") is really notable(~0.3). This tells us that both ITC and NC group have undergone considerable amount of "disturbing" forces (as defined Hardy weinberg law)

			Bussiness interest:
			* There is a shift from one

			</pre>

Raj: /* TD-GD in Euca */

2010-01-10T17:22:22Z

TD-GD in Euca

← Older revision		Revision as of 17:22, 10 January 2010
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	=TD-GD in Euca=		=TD-GD in Euca=
	* Pilot experiment (for CMC)		* Pilot experiment (for CMC) \| [[TD-GD_Pilot]]
	** Data point 1 (ITC clones existing PY/WY/Lignin vs ITC clones He)		** Data point 1 (ITC clones existing PY/WY/Lignin vs ITC clones He)
	** Data point 2 (New clones PY/WY/Lignin vs its He)		** Data point 2 (New clones PY/WY/Lignin vs its He)

Raj: /* TD-GD in Euca */

2010-01-05T16:47:04Z

TD-GD in Euca

← Older revision		Revision as of 16:47, 5 January 2010
Line 5:		Line 5:

	=TD-GD in Euca=		=TD-GD in Euca=
	* Pilot experiment		* Pilot experiment (for CMC)
	** Data point 1 (ITC clones existing PY/WY/Lignin vs ITC clones He)		** Data point 1 (ITC clones existing PY/WY/Lignin vs ITC clones He)
	** Data point 2 (New clones PY/WY/Lignin vs its He)		** Data point 2 (New clones PY/WY/Lignin vs its He)

Raj: /* TD-GD in Euca */

2010-01-05T13:37:49Z

TD-GD in Euca

← Older revision		Revision as of 13:37, 5 January 2010
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	=TD-GD in Euca=		=TD-GD in Euca=
	* Pilot experiment		* Pilot experiment
	** Data point 1 (ITC clones existing PY/WY vs ITC clones He)		** Data point 1 (ITC clones existing PY/WY/Lignin vs ITC clones He)
	** Data point 2 (New clones PY/WY vs its He)		** Data point 2 (New clones PY/WY/Lignin vs its He)
	** Time line JAN 2010		** Time line JAN 2010
	* Real scale [for publication]		* Real scale [for publication]

Raj: /* TD-GD */

2010-01-05T13:36:51Z

TD-GD

← Older revision		Revision as of 13:36, 5 January 2010
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	=TD-GD=		=TD-GD=
	* What it is? It is a graph that plots genetic diversity and trait diversity in consensus units, which depicts the status, essentially helps in decision making on crop improvement programe		* What it is? It is a graph that plots genetic diversity and trait diversity in consensus units, which depicts the status, essentially helps in decision making on crop improvement programe such as
	* ~~TD-GD helps to~~ ascertain the worthiness of the strategies amalgamated to improve the trait diversity		* To ascertain the worthiness of the strategies amalgamated to improve the trait diversity
	* ~~TD-GD helps to~~ provide the scope for necessitating the improvement for genetic diversity		* To provide the scope for necessitating the improvement for genetic diversity

	=TD-GD in Euca=		=TD-GD in Euca=
	* Pilot experiment		* Pilot experiment

Raj at 15:55, 4 January 2010

2010-01-04T15:55:31Z

← Older revision		Revision as of 15:55, 4 January 2010
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	*** Hybrids of Ec vs Ep		*** Hybrids of Ec vs Ep
	*** New Species pool		*** New Species pool
	*** E. ~~erophylla~~ collection		*** E. urophylla collection
	** Strategy		** Strategy
	*** Representative materials (10) from each pool for diversity estimates		*** Representative materials (10) from each pool for diversity estimates (analysis together)
	*** Existing realistic data (Mor Traits)		*** Existing realistic data (Mor. Traits)
	***		*** Plot He vs each mor. traits
			*** Normalise to find out the pattern
			*** Interpret for each type of data

Raj: /* TD-GD in Euca */

2010-01-04T15:53:04Z

TD-GD in Euca

@@ Line 4: / Line 4: @@
 * TD-GD helps to provide the scope for necessitating the improvement for genetic diversity
 =TD-GD in Euca=
-* Materials : Pilot experiment
+* Pilot experiment
 ** Data point 1 (ITC clones existing PY/WY vs ITC clones He)
 ** Data point 2 (New clones PY/WY vs its He)

Raj: /* TD-GD in Euca */

2010-01-04T15:47:02Z

TD-GD in Euca

← Older revision		Revision as of 15:47, 4 January 2010
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	* TD-GD helps to provide the scope for necessitating the improvement for genetic diversity		* TD-GD helps to provide the scope for necessitating the improvement for genetic diversity
	=TD-GD in Euca=		=TD-GD in Euca=
	* Pilot experiment		* Materials : Pilot experiment
	** Data point 1 (ITC clones existing PY/WY vs ITC clones He)		** Data point 1 (ITC clones existing PY/WY vs ITC clones He)
	** Data point 2 (New clones PY/WY vs its He)		** Data point 2 (New clones PY/WY vs its He)

Raj: /* TD-GD in Euca */

2010-01-04T15:46:28Z

TD-GD in Euca

← Older revision		Revision as of 15:46, 4 January 2010
Line 4:		Line 4:
	* TD-GD helps to provide the scope for necessitating the improvement for genetic diversity		* TD-GD helps to provide the scope for necessitating the improvement for genetic diversity
	=TD-GD in Euca=		=TD-GD in Euca=
			* Pilot experiment
			** Data point 1 (ITC clones existing PY/WY vs ITC clones He)
			** Data point 2 (New clones PY/WY vs its He)