Biom - Revision history

Raj at 05:21, 28 October 2016

2016-10-28T05:21:42Z

← Older revision		Revision as of 05:21, 28 October 2016
Line 1:		Line 1:
			[[Category:Bioinformatics]]
	* MSupload https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_26-47cfb25.tar.gz		* MSupload https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_26-47cfb25.tar.gz
	** untar the above file to the extensions folder		** untar the above file to the extensions folder

Raj at 10:10, 3 June 2016

2016-06-03T10:10:08Z

← Older revision		Revision as of 10:10, 3 June 2016
Line 1:		Line 1:
	* MSupload https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_26-47cfb25.tar.gz		* MSupload https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_26-47cfb25.tar.gz
			** untar the above file to the extensions folder
	* simple Table		* simple Table
	<source lang=php>		<source lang=php>

Raj at 10:09, 3 June 2016

2016-06-03T10:09:22Z

← Older revision		Revision as of 10:09, 3 June 2016
Line 171:		Line 171:

	}		}
			</source>

			=Localsettings=

			<source lang=php>

			# End of automatically generated settings.
			# Add more configuration options below.
			# Enables use of WikiEditor by default but still allows users to disable it in preferences
			$wgDefaultUserOptions['usebetatoolbar'] = 1;

			# Enables link and table wizards by default but still allows users to disable them in preferences
			$wgDefaultUserOptions['usebetatoolbar-cgd'] = 1;

			# Displays the Preview and Changes tabs
			$wgDefaultUserOptions['wikieditor-preview'] = 1;

			# Displays the Publish and Cancel buttons on the top right side
			$wgDefaultUserOptions['wikieditor-publish'] = 1;


			# Add More Skins

			# Add more extensions

			require_once("$IP/extensions/SimpleTable.php");


			wfLoadExtension( 'MsUpload' );
			$wgMSU_useDragDrop = true; // Should the drag & drop area be shown?
			$wgMSU_showAutoCat = true; // If true, files uploaded while editing a category will be added to that category
			$wgMSU_checkAutoCat = true; // Whether the checkbox for the above mentioned case is checked by default
			$wgMSU_useMsLinks = false; // Should we allow to insert links in the style of the Extension:MsLinks?
			$wgMSU_confirmReplace = true; // Show the "Replace file?" checkbox
			$wgMSU_imgParams = '400px'; // The default parameters for inserted images
			$wgEnableWriteAPI = true; // Enable the API
			$wgEnableUploads = true; // Enable uploads
			$wgAllowJavaUploads = true; // Solves problem with Office 2007 and newer files (docx, xlsx, etc.)
			$wgGroupPermissions['user']['upload'] = true; // Allow regular users to upload files
			// Make sure that the file types you want to upload are allowed:
			$wgFileExtensions = array('png','gif','jpg','jpeg','doc','xls','pdf','ppt','tiff','bmp','docx','xlsx','pptx');

			# End

	</source>		</source>

Raj: Created page with "* MSupload https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_26-47cfb25.tar.gz * simple Table
2016-06-03T10:07:22Z

Created page with "* MSupload https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_26-47cfb25.tar.gz * simple Table <source lang=php> <?php /* * Tabbed Data extension. * * This extens..."

New page
* MSupload https://extdist.wmflabs.org/dist/extensions/MsUpload-REL1_26-47cfb25.tar.gz
* simple Table
<source lang=php>
<?php

/*
* Tabbed Data extension.
*
* This extension implements a simple method to display tabular data, with a
* far simpler markup than the standard Wiki table markup. The goal is to
* allow tabular data to be very easily pasted in from an external source,
* such as a spreadsheet. The disadvantage is that it doesn't allow for any
* fancy formatting; for example, there is no way (as yet) to set row and cell
* parameters, including row and cell spanning. However, it makes a very
* simple way to include tabular data in a Wiki.
*
* All you need to do is prepare your data in rows, with fields separated
* by tab characters. Excel's "Save as" -> "Text (Tab delimited)" function
* saves data in this format. Place the data inside <tab>...</tab> tags,
* and set any table parameters inside the opening <tab> tag; eg.:
*
* <tab class=wikitable>
* field1\tfield2\t...
* field1\tfield2\t...
* </tab>
*
* Additional parameters allowed in the tag are:
* sep Specify a different separator; see the $separators array.
* head Specify a heading; "head=top" makes the first row a heading,
* "head=left" makes the first column a heading, "head=topleft"
* does both.
* applycssborderstyle Adds a style to the table and each cell using css
* border-colapse to give the table a black 1px border
*
* Thanks for contributions to:
* Smcnaught
* Frederik Dohr
/

$wgExtensionFunctions[] = 'wfSimpleTable';
$wgExtensionCredits['parserhook'][] = array(
'name'=>'SimpleTable',
'author'=>'Johan the Ghost',
'url'=>'http://www.mediawiki.org/wiki/Extension:SimpleTable',
'description'=>'Convert tab-separated or similar data into a Wiki table',
);

/
* Setup SimpleTable extension.
* Sets a parser hook for <tab></tab>.
/
function wfSimpleTable() {
new SimpleTable();
}

class SimpleTable {

/
* The permitted separators. An array of separator style name
* and preg pattern to match it.
/
private $separators = array(
'space' => '/ /',
'spaces' => '/\s+/',
'tab' => '/\t/',
'comma' => '/,/',
'colon' => '/:/',
'semicolon' => '/;/',
'bar' => '/\|/',
);

/
* Construct the extension and install it as a parser hook.
/
public function __construct() {
global $wgParser;
$wgParser->setHook('tab', array(&$this, 'hookTab'));
}

/
* The hook function. Handles <tab></tab>.
* Receives the table content and <tab> parameters.
/
public function hookTab($tableText, $argv, $parser) {
// The default field separator.
$sep = 'tab';

// Default value for using table headings.
$head = null;

// If we are to apply border-colapse CSS Border Style
$applycssborderstyle = false;

// Build the table parameters string from the tag parameters.
// The 'sep' and 'head' parameters are special, and are handled
// here, not passed to the table.
$params = '';
foreach ($argv as $key => $val) {
if ($key == 'sep')
$sep = $val;
else if ($key == 'head')
$head = $val;
else if ($key == 'applycssborderstyle')
$applycssborderstyle = $val;
else
$params .= ' ' . $key . '="' . $val . '"';
}

if (!array_key_exists($sep, $this->separators))
return "Invalid separator: $sep";

// Parse and convert the table body.
$wikiText = $this->convertTable($tableText, $head, $this->separators[$sep], $applycssborderstyle);

// If we are not to apply the css border style
if ($applycssborderstyle == false) {
// Wrap the body in table tags, with the table parameters.
$wikiTable = "{|" . $params . "\n" . $wikiText . "|}";
} else {
$tablestyletext = 'style="border-collapse: collapse; border-width: 1px; border-style: solid; border-color: #000"';
$wikiTable = "{|" . $tablestyletext . " " . $params . "\n" . $wikiText . "|}";
}

// Done. Parse the result, so that the table can contain Wiki
// text. Thanks to Smcnaught.
$ret = $parser->parse($wikiTable,
$parser->mTitle,
$parser->mOptions,
false,
false);
$HTML = trim( str_replace("</table>\n\n", "</table>", $ret->getText()) ); # remove superfluous newlines
return $HTML;
}

/
* Convert tabbed data into a Wiki-markup table body.
*/
private function convertTable($tabbed, $head, $pattern, $applycssborderstyle) {
$wikitab = '';

// Remove initial and final newlines.
$tabbed = trim($tabbed);

// Split the input into lines, and convert each line to table format.
$lines = preg_split('/\n/', $tabbed);
$row = 0;
foreach ($lines as $line) {
$wikitab .= "|-\n";
$bar = strpos($head, 'top') !== false && $row == 0 ? '!' : '|';

if ($applycssborderstyle !== false) {
$bar = $bar . 'style="border-style: solid; border-width: 1px" |';
}

$fields = preg_split($pattern, $line);
$col = 0;
foreach ($fields as $field) {
$cbar = strpos($head, 'left') !== false && $col == 0 ? '!' : $bar;
$wikitab .= $cbar . " " . $field . "\n";
++$col;
}
++$row;
}
return $wikitab;
}

}
</source>