https://www.rajkumar.in/api.php?action=feedcontributions&feedformat=atom&user=115.108.5.0%2F24 2026-07-09T21:11:02Z User contributions MediaWiki 1.46.0 https://www.rajkumar.in/index.php?title=Category:Bioinformatics&diff=2623 2012-05-10T05:36:58Z

<p>115.108.5.162: /* My Perl */</p> <hr /> <div>===Bio ITC Projects===<br /> # [[SSR_Corymbia]]<br /> # [[Ortho-SSR-Euca]]<br /> # [[Transcriptomics-Tobacco]]<br /> # [[GenePrediction-Euca]]<br /> # [[Tilling_Genes]]<br /> # [[SBase Genes]] | Water use efficiency<br /> # [[Casuarina Genome initiative]]<br /> <br /> ===Bio Other Projects===<br /> # [[Ppea-EST]]<br /> # [[Sangar_split]] | Raja, Canada<br /> # [[Soghum Physical mapping]] | EST-GDNA | Rajendrakumar | DRR, Hyderabad<br /> # [[Heterosis Genes Synteny]] | Rice-wheat-maize on Sorghum | RK | DRR, Hyderabad<br /> # [[BES-NR_Blast_Flax]] | Flax BES blast against Non Redundant database<br /> # [[Parse_EST-BES_Flax]] | Parse the required parameters from Blast Output<br /> # [[parse_sorghum_genome.pl]] parse the sorghum genome data to have comfortable files | RK<br /> # [[SSR on BES]] | Uses Misa and Primer3<br /> # [[Repeat_Blast]] | Parse Blast on various repeats<br /> # [[TGICL assembly]] | Caster unigenes | For Rajendra kumar<br /> <br /> === My Perl===<br /> # [[PerlTemplate]]<br /> # [[split_file]]<br /> # [[Fix_digits]]<br /> # [[count_fasta_characters]]<br /> # [[Multithreading]]<br /> # [[Transpose]]<br /> # [[uniq]]<br /> # [[Push_to_Array]]<br /> <br /> ===BioPerl===<br /> # [[BioPerl]]<br /> # [[Fetching_Fasta]]<br /> # [http://jura.wi.mit.edu/bio/education/bioinfo/pages/perl_bioinfo.html Some_Perl_examples]<br /> <br /> ===MySql===<br /> # [[Mysql_commands]]<br /> # [[Phpmyadmin]]<br /> # [[perl-mysql]]<br /> <br /> ===Shell===<br /> # [[Shell]]<br /> ===Software Implementation===<br /> * Genome<br /> ** [[Blast]]<br /> ** [[circos]]<br /> ** [[misa_pipe]]<br /> ** [[tgicl]]<br /> ** [[genemark]]<br /> ** [[genewise]]<br /> ** [[genomethreader]]<br /> ** [[Tablet]] | Assembly | [http://bioinf.scri.ac.uk/tablet/]<br /> ** [[Unscrambler]] | [http://www.camo.com/downloads/products/UnscramblerTrial.zip Download] | Good for PCA<br /> * Stat<br /> ** [[FSTAT]]</div>

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